Information for 1-WGACAATG (Motif 1)

C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G
Reverse Opposite:
A T G C G T C A A C G T A G C T C T A G A C G T G A T C C G T A
p-value:1e-58
log p-value:-1.349e+02
Information Content per bp:1.778
Number of Target Sequences with motif405.0
Percentage of Target Sequences with motif62.21%
Number of Background Sequences with motif8708.9
Percentage of Background Sequences with motif30.88%
Average Position of motif in Targets329.4 +/- 262.4bp
Average Position of motif in Background269.5 +/- 276.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX2/MA0143.4/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:WGACAATG---
AAACAATGGAA
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T A C G T A C G T
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:WGACAATG---
AAACAATGGCA
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T A C G T A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:WGACAATG
-NACAATG
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G
A C G T G C A T C G T A A G T C C G T A C G T A A C G T A C T G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:WGACAATG--
-GACAATGNN
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T A C G T
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-WGACAATG-
VRAACAATGG
 A C G T C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-WGACAATG-
AAAACAATGG
 A C G T C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:7
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---WGACAATG-
VVRRAACAATGG
 A C G T A C G T A C G T C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.83
Offset:0
Orientation:forward strand
Alignment:WGACAATG--
RAACAATGGN
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-WGACAATG-
VRRACAAWGG
 A C G T C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

SOX18/MA1563.1/Jaspar

Match Rank:10
Score:0.81
Offset:1
Orientation:forward strand
Alignment:WGACAATG-
-CACAATGC
 C G A T C T A G C G T A A G T C C T G A C G T A A C G T A T C G A C G T
A C G T T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C