Information for 1-GGGAMWGAGS (Motif 3)

C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
Reverse Opposite:
A T G C G A T C A C G T A G T C G C A T A C G T C G A T T G A C A G T C G T A C
p-value:1e-48
log p-value:-1.107e+02
Information Content per bp:1.546
Number of Target Sequences with motif545.0
Percentage of Target Sequences with motif83.72%
Number of Background Sequences with motif15938.6
Percentage of Background Sequences with motif56.52%
Average Position of motif in Targets343.1 +/- 263.3bp
Average Position of motif in Background270.4 +/- 268.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)2.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pcbp2(KH)/Danio_rerio-RNCMPT00246-PBM/HughesRNA

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGGAMWGAGS
GGGAAAN---
 C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
A C T G A C T G A C T G C G T A C G T A C G T A A C T G A C G T A C G T A C G T

PCBP3(KH)/Mus_musculus-RNCMPT00215-PBM/HughesRNA

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGGAMWGAGS
AGGGAAAG---
 A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
C G T A A C T G A C T G C T A G C G T A C G T A C T G A C A T G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGAMWGAGS
GGAACAAAGR
 C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SeqBias: GA-repeat

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGAMWGAGS
GAGAGAGAGA
 C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A

PB0124.1_Gabpa_2/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GGGAMWGAGS
NNNNGGGGGAAGANGG
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G

RO3G_00049(RRM)/Rhizopus_oryzae-RNCMPT00205-PBM/HughesRNA

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGAMWGAGS
AGGGGAA-----
 A C G T A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
C T G A C A T G A C T G A C T G A C T G C T G A C G T A A C G T A C G T A C G T A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGGAMWGAGS
CCTGGGAAAG---
 A C G T A C G T A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T A C G T A C G T

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGGAMWGAGS---
-RGAGAGAGAAAG
 C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G A C G T A C G T A C G T
A C G T C T A G C T A G T C G A C T A G C G T A A T C G T C G A A C T G C T G A T C G A C T G A T A C G

Trl/dmmpmm(Down)/fly

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGGAMWGAGS
GAGAGAGAGAGC
 A C G T A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGGAMWGAGS--
GAGAGAGAGAGCAA
 A C G T A C G T C A T G T C A G A C T G G C T A T G C A C G T A T C A G T G C A C T A G T A C G A C G T A C G T
T C A G T G C A T C A G G C T A A C T G T G C A T C A G C T G A C T A G G T C A C T A G G T A C T C G A C T G A