Information for 3-CTGCAATTAT (Motif 4)

A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
Reverse Opposite:
C T G A G A C T C T G A C T G A A C G T A C G T C A T G A G T C C G T A A T C G
p-value:1e-42
log p-value:-9.793e+01
Information Content per bp:1.758
Number of Target Sequences with motif475.0
Percentage of Target Sequences with motif72.96%
Number of Background Sequences with motif12982.8
Percentage of Background Sequences with motif46.04%
Average Position of motif in Targets341.7 +/- 264.4bp
Average Position of motif in Background283.5 +/- 286.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.95
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DLX5/MA1476.1/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:CTGCAATTAT
--GCAATTAC
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T T A C G G A T C T G C A C G T A A C G T A C G T C G T A A G T C

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CTGCAATTAT-----
NNNGGTAATTATNGNGN
 A C G T A C G T A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T A C G T A C G T A C G T A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

Dll/MA0187.1/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CTGCAATTAT
--GTAATTA-
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T T C A G G A C T G C T A C G T A A C G T A G C T C G T A A C G T

A1CF(RRM)/Homo_sapiens-RNCMPT00001-PBM/HughesRNA

Match Rank:4
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CTGCAATTAT
---CAATTAN
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A C G A T

Dlx2/MA0885.1/Jaspar

Match Rank:5
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CTGCAATTAT
--GCAATTAA
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A

Dll/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CTGCAATTAT--
--GTAATTANNN
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T A C G T A C G T
A C G T A C G T T C A G G A C T G C T A C G T A A C G T A G C T C G T A C A T G T C G A G T A C

YHP1/MA0426.1/Jaspar

Match Rank:7
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CTGCAATTAT
---CAATTA-
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C G T

YHP1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CTGCAATTAT
---CAATTA-
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C G T

YHP1(MacIsaac)/Yeast

Match Rank:9
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CTGCAATTAT
---CAATTA-
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T C G T A A C G T

Dlx4/MA0881.1/Jaspar

Match Rank:10
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CTGCAATTAT
--CCAATTAC
 A T G C G C A T C T A G G T A C C G T A C G T A A G C T A G C T C T G A G A C T
A C G T A C G T T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C