Information for 1-AGCAACAGCARC (Motif 5)

C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
Reverse Opposite:
A C T G A G T C G C A T C T A G A G T C C G A T C T A G A G C T A C G T C A T G A G T C G C A T
p-value:1e-42
log p-value:-9.680e+01
Information Content per bp:1.582
Number of Target Sequences with motif600.0
Percentage of Target Sequences with motif92.17%
Number of Background Sequences with motif19768.1
Percentage of Background Sequences with motif70.10%
Average Position of motif in Targets334.7 +/- 254.3bp
Average Position of motif in Background261.4 +/- 268.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GCW-triplet

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGCAACAGCARC
AGCAGCAGCAGC
 C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
C G A T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C

RAV1(1)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGCAACAGCARC
CAGCAACAGAAA-
 A C G T C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
T G A C G C T A T A C G A G T C T G C A T G C A A G T C C G T A C A T G C G T A C G T A C T G A A C G T

RAV1/MA0582.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGCAACAGCARC
CAGCAACAGAAA-
 A C G T C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
T G A C G C T A T A C G A G T C T G C A T G C A A G T C C G T A C A T G C G T A C G T A C T G A A C G T

PRDM4/MA1647.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCAACAGCARC
NAGAAACAGNN--
 A C G T C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
C G A T C G T A C A T G C G T A T C G A C G T A A G T C G C T A A T C G G T C A G A T C A C G T A C G T

Adf1/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCAACAGCARC
NACAGAAGCAGC
 C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
C A G T C T A G A G T C C T A G A C T G G T A C C T A G A C T G A T C G C G T A A C T G A G T C

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCAACAGCARC
DGCAGCTGCYSS
 C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

ovo/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCAACAGCARC
AGTAACNGT---
 C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
G C T A A T C G C G A T C G T A C G T A A G T C G C T A A C T G G C A T A C G T A C G T A C G T

Aef1/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCAACAGCARC
--CAACAACA--
 C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A A G T C C G T A A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AGCAACAGCARC-
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCAACAGCARC-
ADGGYAGYAGCATCT
 A C G T A C G T C G T A T C A G G T A C T G C A T C G A G A T C G C T A C T A G G A T C C G T A T C A G T G A C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T