Information for 6-MAARAACACA (Motif 10)

T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
Reverse Opposite:
A G C T A C T G A G C T A C T G A C G T A C G T G A C T A C G T A C G T A C G T
p-value:1e-9
log p-value:-2.246e+01
Information Content per bp:1.694
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif63.47%
Number of Background Sequences with motif11096.3
Percentage of Background Sequences with motif39.04%
Average Position of motif in Targets298.4 +/- 219.4bp
Average Position of motif in Background267.5 +/- 249.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:MAARAACACA
-AAAAACA--
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T G T C A G T C A C G T A G T C A C G T A A G T C C G T A A C G T A C G T

BRUNOL4(RRM)/Homo_sapiens-RNCMPT00004-PBM/HughesRNA

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:MAARAACACA
---ACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T A C G T A C G T G T C A G T A C G T C A G T A C C G T A G T A C G T C A

ara/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:MAARAACACA
AAATAACAAA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
C T G A T G C A C G T A C G A T C G T A C G T A A G T C C G T A A C G T A C G T

SeqBias: CA-repeat

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:MAARAACACA
CACACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A

BRUNOL5(RRM)/Homo_sapiens-RNCMPT00166-PBM/HughesRNA

Match Rank:5
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:MAARAACACA
---ACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T A C G T A C G T G T C A G T A C G T C A G T A C C G T A G T A C C G T A

HNRNPL(RRM)/Homo_sapiens-RNCMPT00027-PBM/HughesRNA

Match Rank:6
Score:0.73
Offset:3
Orientation:forward strand
Alignment:MAARAACACA
---ACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T A C G T A C G T G T C A G T A C C G T A G A T C C G T A G T A C G T C A

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--MAARAACACA---
AAAAATAACAAACGG
A C G T A C G T T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

ARET(RRM)/Drosophila_melanogaster-RNCMPT00114-PBM/HughesRNA

Match Rank:8
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:MAARAACACA
--AACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T A C G T G T C A G T C A G T A C C G T A G T A C G T C A G T A C C G T A

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:MAARAACACA
AAAAAACAAA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
C G T A C T G A G T C A C G T A C G T A C G T A A G T C C G T A A C G T A C G T

ARET(RRM)/Drosophila_melanogaster-RNCMPT00003-PBM/HughesRNA

Match Rank:10
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:MAARAACACA
---ACACACA
T G C A G T C A G T C A C T G A G T C A C G T A A G T C T C G A G T A C C T G A
A C G T A C G T A C G T G T C A G T A C C G T A G T A C G T C A G T A C C G T A