Information for 3-TGGAGTCC (Motif 2)

G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
Reverse Opposite:
A T C G C T A G G T C A A T G C A G C T T G A C A T G C C G T A
p-value:1e-20
log p-value:-4.750e+01
Information Content per bp:1.604
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif61.08%
Number of Background Sequences with motif7395.2
Percentage of Background Sequences with motif26.02%
Average Position of motif in Targets291.4 +/- 238.0bp
Average Position of motif in Background251.5 +/- 270.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TGGAGTCC----
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

Pp_0237(RRM)/Physcomitrella_patens-RNCMPT00237-PBM/HughesRNA

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TGGAGTCC
GATGGAGT--
 A C G T A C G T G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C T G C G T A A C G T A C T G A C T G C G T A C T A G A C G T A C G T A C G T

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TGGAGTCC
--GAGTCA
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C G T A C G T A C T G C G T A A C T G A C G T A T G C C G T A

ARG81/MA0272.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGGAGTCC-
-NGAGTCAC
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C A C G T
A C G T C G T A A C T G C G T A C T A G A C G T A G T C G C T A G A T C

ARG81(MacIsaac)/Yeast

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TGGAGTCC-
-NGAGTCAC
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C A C G T
A C G T C T G A A C T G C G T A C T A G A C G T A G T C G C T A G A T C

BAS1(MacIsaac)/Yeast

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGGAGTCC
GNAAGAGTCA
 A C G T A C G T G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
C T A G T C A G G T C A T C G A C T A G C T G A C T A G G A C T A G T C G T C A

ARG80/MA0271.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGGAGTCC
--GCGTCT
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C G T A C G T C T A G G T A C A C T G A C G T A G T C C G A T

ARG80(MacIsaac)/Yeast

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGGAGTCC
--GCGTCT
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C G T A C G T C T A G G T A C A C T G A C G T A G T C C G A T

GCN4/GCN4_SM/121-GCN4(Harbison)/Yeast

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGAGTCC
-TGAGTCA
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C G T G C A T A C T G C T G A T A C G G C A T T G A C C G T A

ADR1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGGAGTCC
NGGAGG--
 G C A T T A C G A C T G C T G A T A C G A C G T G A T C T A G C
A C G T A C T G A C T G C T A G A C T G A C G T A C G T A C G T