Information for 3-TSGAAATCCC (Motif 4)

A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G C T A G A C T G C G T A A C G T A C G T A G C T A G T C A T C G C G T A
p-value:1e-16
log p-value:-3.752e+01
Information Content per bp:1.897
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif90.42%
Number of Background Sequences with motif17527.1
Percentage of Background Sequences with motif61.66%
Average Position of motif in Targets324.9 +/- 217.3bp
Average Position of motif in Background263.9 +/- 268.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

dl(var.2)/MA0023.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TSGAAATCCC-
-GGAAAACCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A C G A T G T A C A G T C G T A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TSGAAATCCC-
-GGAAATTCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TSGAAATCCC-
-GGAAATCCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TSGAAATCCC-
-GGAAANCCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TSGAAATCCC--
GGGAAATCCCCN
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

dl-B/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TSGAAATCCC-
GGGAATTCCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A T C G T C A G C A T G C T G A C G T A C G A T C G A T A G T C A G T C A T G C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TSGAAATCCC-
-GGAAATTCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

dl/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TSGAAATCCC-
-GGGAAATCCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T
A C G T T A C G A C T G T C A G T C G A C G T A G C T A G A C T A G T C T G A C T G A C

MZF1/MA0056.2/Jaspar

Match Rank:9
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TSGAAATCCC-----
--CAAATCCCCACTT
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T G C A T G C A C G A T T A G C G T A C G A T C G A T C G C T A G A T C G C A T A G C T

dl/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TSGAAATCCC
GGGAAAATCC
 A C G T A T G C A C T G C T G A C G T A C G T A A C G T A G T C A G T C A G T C
A T C G T C A G C T A G T C G A G C T A C G T A C G T A G A C T G T A C T G A C