Information for 3-CGTGGCCATGGC (Motif 8)

A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C G A T C C G T A A G T C A T C G
p-value:1e-12
log p-value:-2.973e+01
Information Content per bp:1.889
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif71.26%
Number of Background Sequences with motif12177.8
Percentage of Background Sequences with motif42.84%
Average Position of motif in Targets315.0 +/- 249.9bp
Average Position of motif in Background243.3 +/- 253.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CGTGGCCATGGC--
NGTTGCCATGGCAA
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX1/RFX1_YPD/[](Harbison)/Yeast

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CGTGGCCATGGC--
-GTTGCCATGGCAA
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T
A C G T A T C G A C G T G A C T T C A G A G T C A G T C C T G A A G C T C T A G T C A G A G T C C T G A C G T A

RFX3/MA0798.2/Jaspar

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CGTGGCCATGGC-
CGGTTGCTATGGCA
 A C G T A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

RFX4/MA0799.1/Jaspar

Match Rank:4
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CGTGGCCATGGC----
CGTTGCCATGGCAACN
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX1(MacIsaac)/Yeast

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CGTGGCCATGGC---
-GTTGCCATGGCAAC
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T
A C G T T C A G G A C T G A C T T C A G T G A C G A T C T G C A A C G T C T A G T C A G A T G C C T G A C G T A A T G C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGTGGCCATGGC--
GGTTGCCATGGCAA
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CGTGGCCATGGC---
KGTTGCCATGGCAAC
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGTGGCCATGGC----
CGTTGCCATGGCAACG
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CGTGGCCATGGC---
CGGTTGCCATGGCAAC
 A C G T A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGTGGCCATGGC----
CGTTGCCATGGCAACG
 A T G C A C T G A C G T C T A G C T A G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G