Information for 4-ATGGCTGGCTGG (Motif 10)

C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
Reverse Opposite:
A G T C G T A C C G T A A C T G G T A C A G T C C G T A A C T G A G T C A G T C C T G A C G A T
p-value:1e-4
log p-value:-1.125e+01
Information Content per bp:1.851
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif102.9
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets193.3 +/- 165.8bp
Average Position of motif in Background228.2 +/- 207.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATGGCTGGCTGG
GTCATGCHTGRCTGS
 A C G T A C G T A C G T C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

ARF34/MA1693.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATGGCTGGCTGG-
NNTGCTGTCTGNN
 C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G A C G T
A T G C A G C T A C G T A C T G G T A C G C A T A T C G A G C T A G T C A C G T A T C G G A C T G A C T

sma-4/MA0925.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATGGCTGGCTGG--
---AGTGTCTGGAC
 C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G A C G T A C G T
A C G T A C G T A C G T C G T A T C A G A C G T A C T G C G A T A G T C A C G T C T A G A C T G T C G A A G T C

ZFP42/MA1651.1/Jaspar

Match Rank:4
Score:0.62
Offset:-8
Orientation:forward strand
Alignment:--------ATGGCTGGCTGG-
GTTCCAAAATGGCTGCCTCCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G A C G T
A T C G G C A T G C A T G T A C G T A C C T G A C G T A T C G A C T G A A G C T T A C G A C T G G T A C A C G T A T C G G A T C A G T C G A C T A T G C A T G C T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ATGGCTGGCTGG
----CTGTCTGG
 C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

pho/MA1460.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGGCTGGCTGG
AAATGGCCGCC---
 A C G T A C G T C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
G T C A C T G A T G C A A G C T A T C G A C T G G T A C A T G C C T A G G T A C A G T C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATGGCTGGCTGG-----
NNTNNTGTCTGGNNTNG
 C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCTGGCTGG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATGGCTGGCTGG
--VBSYGTCTGG
 C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

KLF17/MA1514.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCTGGCTGG--
AAGGGGTGCGTGGTG
 A C G T C G T A A G C T A C T G C T A G G T A C A C G T C T A G A C T G G T A C A C G T A C T G C T A G A C G T A C G T
C T G A C T G A A C T G C T A G A T C G A T C G G C A T C A T G A G T C C T A G C G A T A C T G A C T G C A G T C A T G