Information for 2-GCATAATAATGA (Motif 2)

A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
Reverse Opposite:
A C G T T G A C C T G A C G A T G A C T T G C A G A C T C A G T G C T A A G C T A C T G T A G C
p-value:1e-16
log p-value:-3.757e+01
Information Content per bp:1.618
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif50.79%
Number of Background Sequences with motif6101.9
Percentage of Background Sequences with motif22.81%
Average Position of motif in Targets272.8 +/- 202.3bp
Average Position of motif in Background298.6 +/- 305.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

QKR58E-1(KH)/Drosophila_melanogaster-RNCMPT00142-PBM/HughesRNA

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCATAATAATGA
--ATAATAA---
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
A C G T A C G T C G T A C G A T C G T A C G T A A C G T G C T A G T C A A C G T A C G T A C G T

YOX1/Literature(Harbison)/Yeast

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCATAATAATGA--
--ACAATANTGAAA
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A A C G T A C G T
A C G T A C G T C G T A A T C G C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCATAATAATGA
ATTTGCATAACAAAG-
 A C G T A C G T A C G T A C G T A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCATAATAATGA
ATTTGCATAACAATG-
 A C G T A C G T A C G T A C G T A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCATAATAATGA
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T A C G T A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T

eve/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCATAATAATGA
-AATAATTA---
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
A C G T G T C A G T C A A G C T T C G A C T G A G C A T G C A T C G T A A C G T A C G T A C G T

MEX-5(Znf)/Caenorhabditis_elegans-RNCMPT00039-PBM/HughesRNA

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCATAATAATGA
--ATAATAAN--
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
A C G T A C G T C G T A A C G T C G T A C G T A A C G T C G T A C G T A C G A T A C G T A C G T

gt/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCATAATAATGA
ACGTAATAAT--
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
T C G A G T A C T A C G A G C T G T C A C G T A C G A T C G T A C G T A C G A T A C G T A C G T

Pdp1/MA1702.1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCATAATAATGA
NATTGCATAANN----
 A C G T A C G T A C G T A C G T A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
C G T A C T G A G C A T A C G T C T A G G A T C C T G A G A C T G T C A G C T A G A C T G C A T A C G T A C G T A C G T A C G T

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATAATAATGA
GCATAAA-----
 A T C G T G A C C T G A C G A T G T C A C T G A A C G T C T G A G C T A A G C T A C T G G T C A
C T A G T A G C G C T A C G A T G C T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T