Information for 3-GGGAGTTATG (Motif 4)

A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
Reverse Opposite:
A T G C C G T A A C G T G T C A C T G A G T A C A G C T G T A C T A G C T G A C
p-value:1e-10
log p-value:-2.415e+01
Information Content per bp:1.708
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif10.99%
Number of Background Sequences with motif456.2
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets171.0 +/- 157.8bp
Average Position of motif in Background260.7 +/- 271.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tb_0218(RRM)/Trypanosoma_brucei-RNCMPT00218-PBM/HughesRNA

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GGGAGTTATG-
---AGTTATTA
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G A C G T
A C G T A C G T A C G T C G T A C A T G A C G T A C G T C G T A A C G T G C A T C T G A

pros/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGGAGTTATG
---AGNCATG
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
A C G T A C G T A C G T C T G A A C T G G C T A T A G C C T G A C G A T A C T G

STB5/STB5_YPD/[](Harbison)/Yeast

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGGAGTTATG
CGGTGTTATA
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
G A T C T A C G C T A G C G A T T A C G G C A T A C G T C G T A G C A T C T G A

TFAM/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GGGAGTTATG
-----TTATC
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C

HAP1(MacIsaac)/Yeast

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGGAGTTATG-
-GGNGTTATCG
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G A C G T
A C G T A T C G T A C G T C G A T C A G G C A T A G C T C G T A G A C T G A T C T A C G

abd-A/dmmpmm(Down)/fly

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGGAGTTATG
---ATTTAT-
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
A C G T A C G T A C G T C G T A C G A T C G A T C A G T C G T A G C A T A C G T

hkb/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTATG
GGGGCGTTA--
 A C G T A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
A C G T A C T G A C T G A C T G A G T C A C T G A C G T A C G T C T A G A C G T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGGAGTTATG---
AAATGATTTATGGCT
 A C G T A C G T A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G A C G T A C G T A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

Unknown2/Drosophila-Promoters/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGAGTTATG
--TAGKGATG
 A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G
A C G T A C G T A G C T C G T A A C T G A C G T A C T G G C T A A C G T A C T G

PBX2/MA1113.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGTTATG--
NNTGATTTATGNN
 A C G T A C T G A T C G C A T G T C G A C A T G G A C T C A G T T G C A A C G T A T C G A C G T A C G T
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C