Information for 5-TTATAAAATA (Motif 9)

G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
Reverse Opposite:
G C A T C G T A G C A T C G A T G A C T G C A T C T G A C G A T C G T A C G T A
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.575
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif78.44%
Number of Background Sequences with motif15128.0
Percentage of Background Sequences with motif53.22%
Average Position of motif in Targets354.5 +/- 248.4bp
Average Position of motif in Background324.0 +/- 287.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

KHDRBS1(KH)/Homo_sapiens-RNCMPT00169-PBM/HughesRNA

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:TTATAAAATA
--ATAAAAG-
 G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
A C G T A C G T C G T A A C G T C G T A C G T A C G T A C G T A T C A G A C G T

croc/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TTATAAAATA
--ATAAAA--
 G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
A C G T A C G T C T G A A C G T C G T A C G T A G T C A C G T A A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAATA
NCYAATAAAA--
 A C G T A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

Abd-B/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TTATAAAATA
TCATAAAA--
 G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
G A C T T A G C C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TTATAAAATA---
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TTATAAAATA--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAATA
NCYAATAAAA--
 A C G T A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

abd-B/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTATAAAATA
TCATAAAAC-
 G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
G A C T G T A C C T G A A C G T C G T A C G T A C G T A G C T A T A G C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAATA
GTCATAAAAN-
 A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

CG12361/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTATAAAATA
GTAATAAAAN-
 A C G T G C A T G C A T G C T A G A C T C G T A C T G A G C T A C G T A G C A T C G T A
A T C G A G C T T G C A C G T A A C G T G C T A C G T A C G T A G T C A C G A T A C G T